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Data Engineer, Radiology

The Brigham and Women's Hospital, Inc. Boston, MA

Boston, MA

Today

$75k - $110k/yr Full time Python Clinical Data Engineering Cloud Workflows

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Job Description

Join the Department of Radiology Research to help harmonize cancer imaging datasets into IDC-ready DICOM representations and advance imaging analysis software for large-scale research.

Responsibilities

Harmonize contributed cancer imaging datasets (radiology, digital pathology, annotations, AI analysis results) into standard DICOM representation and prepare datasets for ingestion into IDC.
Develop and maintain open source Python and C++ tools for IDC access and for converting between DICOM and research formats (including idc-index, highdicom, dcmqi, wsidicomizer, and related packages).
Build and run cloud-based analysis workflows using Google Cloud, Terra, and JetStream2 to apply open source AI analysis tools to large imaging cohorts and encode outputs as DICOM.
Develop and maintain agentic interfaces to IDC, applying agentic approaches to support the project and its users.
Modernize 3D Slicer architecture by implementing modules against revised core libraries, reimplementing existing capabilities as reusable packages, and creating tests.
Test and integrate components from collaborating institutions (DICOM validator, annotation infrastructure, DICOM standard tooling); report defects upstream.
Create documentation and learning resources including tutorials, example notebooks, and webinar materials.
Support users through the IDC forum.
Participate in team meetings and track work in GitHub.
Identify project needs, design, develop, and validate new software to meet those needs.
Analyze and help fill computer hardware requirements associated with the required software development.
Optimize software performance to align with clinical objectives.
Write diagnostic software to test and ensure performance and accuracy of implemented solutions.
Produce detailed analyses and diagrams as needed for manuscript preparation and grant submissions.
Perform duties related to onboarding and maintaining workplace compliance/employability.

Requirements

Bachelor’s degree required (Computer Science highly preferred).
Master’s degree in a related science or engineering field highly preferred.
Experience in advanced MR image reconstruction software development is considered essential.
Experience in advanced MR imaging reconstruction: > 2 years required.
Experience in the medical field and patient care: > 1 year preferred.
Proficiency in Python, Matlab, C++, and AI frameworks such as PyTorch.
Proficiency in GPU and CPU multi-threaded programming.
Proficiency with Linux, Windows, and Mac.
Good knowledge and comfort with MR reconstruction and analysis packages including BART, XD-GRASP, SigPy, and FreeSurfer.
Strong attention to detail and good communication skills, particularly for documentation.

Technology Stack

Python, C++, DICOM, IDC
idc-index, highdicom, dcmqi, wsidicomizer
Google Cloud, Terra, JetStream2
3D Slicer, GitHub
Matlab, PyTorch, GPU, CPU multi-threaded programming
Linux, Windows, Mac
BART, XD-GRASP, SigPy, FreeSurfer

Location and Work Details

Work mode: Onsite
Work location: 75 Francis Street
Schedule: 40 hours per week
Work shift: Day (United States of America)
Employee type: Regular
Pay range: $75,275.20 - $109,553.60/Annual
Grade: 6

Education

Bachelor’s degree required

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